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Aviva Tissue Tool

The gene expression profile information found on this page is intended to assist researchers in identifying tissues/cell samples that express a given gene. Only data supported, expression-positive tissues/cell samples (i.e., AVG > MEAN) are displayed for each dataset. Gene expression profile information is taken from nucleic acid-based microarray analysis and does not necessarily imply appreciable amounts at the protein level in the tissue/cell samples indicated. Select expression data from multiple probesets (i.e., individual microarray experiments) using the drop down menu, where applicable. Microarray data is best suited for comparing multiple samples across a single probeset. Comparing expression values across different probesets is not recommended. Only human and mouse gene ID data is supported.

Gene ID:

Gene Name: PTN pleiotrophin [ Homo sapiens (human) ]

GeneAtlas

Values are based on gene expression data taken from microarrays measuring whole-genome expression for a given tissue/cell type.

Probeset:

Probeset: 209465_x_at

SampleAvgMean
Amygdala315.362.66
Caudatenucleus73.662.66
Cerebellum98.762.66
CerebellumPeduncles139.3562.66
CingulateCortex134.162.66
Fetalbrain255.2562.66
GlobusPallidus62.862.66
Hypothalamus126.862.66
OccipitalLobe139.762.66
Pituitary212.9562.66
PrefrontalCortex282.262.66
Spinalcord246.7562.66
SubthalamicNucleus63.162.66
Thalamus74.9562.66
Wholebrain87.362.66
pineal_day295.8262.66
pineal_night458.7862.66
retina92.17562.66

Probeset: 209466_x_at

SampleAvgMean
Amygdala439.1208
Caudatenucleus300.5208
Cerebellum231208
CerebellumPeduncles509.1208
CingulateCortex429.2208
Fetalbrain667.1208
GlobusPallidus209.15208
Hypothalamus593.7208
MedullaOblongata323.85208
OccipitalLobe530.85208
OlfactoryBulb274.9208
ParietalLobe417.1208
Pituitary967.65208
Pons212.35208
PrefrontalCortex484.5208
Prostate252.25208
Spinalcord404.3208
SubthalamicNucleus242.1208
SuperiorCervicalGanglion214.5208
TemporalLobe383.25208
TestisGermCell342.9208
Thalamus223.8208
UterusCorpus211.4208
Wholebrain494.6208
pineal_day546.6208
pineal_night1175.34208
retina435.975208

Probeset: 211737_x_at

SampleAvgMean
Amygdala977.65350.05
Caudatenucleus429.8350.05
Cerebellum408.65350.05
CerebellumPeduncles899.6350.05
CingulateCortex684350.05
Fetalbrain1220.75350.05
Hypothalamus1178.95350.05
MedullaOblongata433.8350.05
OccipitalLobe1075.55350.05
OlfactoryBulb478.25350.05
ParietalLobe428.3350.05
Pituitary1193.85350.05
PrefrontalCortex1020.8350.05
Spinalcord787.05350.05
TemporalLobe498.1350.05
TestisGermCell635.7350.05
Uterus390.25350.05
Wholebrain809.85350.05
pineal_day1456.78350.05
pineal_night2887.54350.05
retina717.85350.05

NCI60

This data set displays a survey across a diverse set of tissue culture cell lines by microarray.

Probeset:

Probeset: 208408_at

SampleAvgMean
7863.8383.78
A3613.7963.78
A5493.8383.78
ACC33.9253.78
ALVA313.8893.78
CAKI13.8933.78
CCRT CEM4.5673.78
GM1333.8673.78
GM16003.8933.78
GM23133.8173.78
GM23453.7813.78
GM24933.8953.78
GM974.0763.78
HEK 293 T-rex3.8073.78
HEK2933.8153.78
HL603.81453.78
HT293.9243.78
K5623.9893.78
KM123.8573.78
MALME 3M3.9733.78
MD MB2313.8553.78
MDA MB4353.9153.78
MOLT43.8733.78
NCI 4603.8293.78
NCI H2263.8233.78
OVCAR33.8943.78
PANC13.7993.78
RL73.8233.78
RPMI 82263.8133.78
RS118463.8723.78
SAOS23.813.78
SKOV33.8323.78
SR3.8163.78
SW6203.8783.78
T243.9073.78
T3M43.9143.78
UACC623.8033.78
ZR75_13.8293.78
astrocytes3.78353.78
huh-73.91153.78

Probeset: 209465_x_at

SampleAvgMean
GM1600463.56558.77
GM2313303.05658.77
GM2345513.19658.77
HS578T105.42858.77
LN18436.61858.77
SF295211.35658.77
SNB19784.58558.77
SNB75114.40958.77
U118107.2158.77
U13865.62458.77
U251464.02158.77
U87429.304558.77
astrocytes220.61158.77

Probeset: 209466_x_at

SampleAvgMean
GM2313830.085140.4
HS578T2060.285140.4
LN18371.6645140.4
SAOS2425.228140.4
SF2951592.065140.4
SNB193788.156140.4
SNB75288.368140.4
U118190.8845140.4
U138277.1925140.4
U251772.768140.4
U87582.682140.4
astrocytes567.964140.4

Probeset: 211737_x_at

SampleAvgMean
GM16001201.15241.51
GM23131012.057241.51
GM2345852.559241.51
HS578T1588.62241.51
LN18891.1115241.51
SAOS2716.567241.51
SF2952498.438241.51
SNB194256.925241.51
SNB75997.136241.51
U118622.7575241.51
U138753.2145241.51
U20S301.865241.51
U2511912.663241.51
U871181.596241.51
astrocytes1088.1225241.51

UniGene EST

EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by sequence submitters).

Type:

Please go here to view list of all tissues and cell lines tested.

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Legend for all data units:

BioGPS (GeneAtlas and NCI60): Expression values relate to array fluorescence intensity for a given gene for a given probeset.
Avg: The average statistical value from two readings from the same probeset experiment.
Median: The median statistical value across all tissue/cell readings; and the threshold for positive expression determination.

NCBI UniGene EST: EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by NCBI sequence submitters).
Libraries known to be normalized, subtracted, or otherwise biased have been removed, but for a variety of reasons, EST counts may not be a true indication of gene activity.
TPM: Transcripts per million
Gene EST/Total EST: Raw number of specific gene EST’s detected in total EST’s from that tissue pool.

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