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Aviva Tissue Tool

The gene expression profile information found on this page is intended to assist researchers in identifying tissues/cell samples that express a given gene. Only data supported, expression-positive tissues/cell samples (i.e., AVG > MEAN) are displayed for each dataset. Gene expression profile information is taken from nucleic acid-based microarray analysis and does not necessarily imply appreciable amounts at the protein level in the tissue/cell samples indicated. Select expression data from multiple probesets (i.e., individual microarray experiments) using the drop down menu, where applicable. Microarray data is best suited for comparing multiple samples across a single probeset. Comparing expression values across different probesets is not recommended. Only human and mouse gene ID data is supported.

Gene ID:

Gene Name: ASTN2 astrotactin 2 [ Homo sapiens (human) ]

GeneAtlas

Values are based on gene expression data taken from microarrays measuring whole-genome expression for a given tissue/cell type.

Probeset:

Probeset: 209693_at

SampleAvgMean
CardiacMyocytes18.116.25
Hypothalamus23.7516.25
Prostate69.7516.25
TestisGermCell22.916.25
Thalamus28.7516.25
pineal_day111.616.25
pineal_night88.8616.25

Probeset: 215407_s_at

SampleAvgMean
Cerebellum1311.76
CerebellumPeduncles19.511.76
PrefrontalCortex12.5511.76
Prostate29.7511.76
Testis14.211.76
TestisGermCell14.611.76
Thalamus13.111.76
pineal_day98.911.76
pineal_night44.1211.76

NCI60

This data set displays a survey across a diverse set of tissue culture cell lines by microarray.

Probeset:

Probeset: 209693_at

SampleAvgMean
A36116.75414.83
ACHN17.39814.83
ALVA3118.12214.83
CCRT CEM15.57514.83
LOX IMVI16.24414.83
SHSYSY+RA53.2514.83
SHSYSY-RA55.98114.83
TK1022.16114.83
UACC62492.43214.83
UO3121.74714.83

Probeset: 215407_s_at

SampleAvgMean
ACHN20.03513.18
SHSYSY+RA35.18813.18
SHSYSY-RA114.98913.18
UACC62509.69513.18
UO3116.08413.18

UniGene EST

EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by sequence submitters).

Type:

Breakdown by Body Sites

Pool NameTPMGene EST/Total EST in pool
Adipose Tissue771/12866
Adrenal Gland602/32940
Ascites502/39834
Blood81/122252
Bone272/71618
Brain4348/1092688
Cervix412/48486
Embryonic Tissue143/212896
Eye6213/208840
Heart111/89524
Intestine41/231981
Kidney235/210778
Liver92/205291
Lung83/334815
Mammary Gland61/151230
Mouth151/66150
Muscle182/106371
Ovary394/101488
Pancreas41/213440
Parathyroid481/20594
Pituitary Gland1212/16526
Placenta72/283019
Prostate428/189536
Spleen372/53397
Stomach101/95679
Testis5725/435204
Thymus121/79697
Uterus256/232093

Breakdown by Health State

Pool NameTPMGene EST/Total EST in pool
Adrenal Tumor791/12655
Breast (mammary Gland) Tumor101/93090
Cervical Tumor572/34484
Chondrosarcoma242/82838
Gastrointestinal Tumor162/118498
Germ Cell Tumor4512/263230
Glioma748/107194
Head And Neck Tumor71/133826
Kidney Tumor433/68872
Liver Tumor202/96023
Non-neoplasia101/96623
Normal2791/3328811
Ovarian Tumor524/76185
Primitive Neuroectodermal Tumor...628/127001
Retinoblastoma643/46439
Soft Tissue/muscle Tissue Tumor152/125265
Uterine Tumor111/90107

Breakdown by Developmental Stage

Pool NameTPMGene EST/Total EST in pool
Blastocyst322/61448
Fetus148/556978
Infant421/23511
Juvenile171/55574
Adult2448/1921829

Please go here to view list of all tissues and cell lines tested.

Would you like to participate in a quick survey?

Legend for all data units:

BioGPS (GeneAtlas and NCI60): Expression values relate to array fluorescence intensity for a given gene for a given probeset.
Avg: The average statistical value from two readings from the same probeset experiment.
Median: The median statistical value across all tissue/cell readings; and the threshold for positive expression determination.

NCBI UniGene EST: EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by NCBI sequence submitters).
Libraries known to be normalized, subtracted, or otherwise biased have been removed, but for a variety of reasons, EST counts may not be a true indication of gene activity.
TPM: Transcripts per million
Gene EST/Total EST: Raw number of specific gene EST’s detected in total EST’s from that tissue pool.

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