Aviva Tissue Tool

The gene expression profile information found on this page is intended to assist researchers in identifying tissues/cell samples that express a given gene. Only data supported, expression-positive tissues/cell samples (i.e., AVG > MEAN) are displayed for each dataset. Gene expression profile information is taken from nucleic acid-based microarray analysis and does not necessarily imply appreciable amounts at the protein level in the tissue/cell samples indicated. Select expression data from multiple probesets (i.e., individual microarray experiments) using the drop down menu, where applicable. Microarray data is best suited for comparing multiple samples across a single probeset. Comparing expression values across different probesets is not recommended. Only human and mouse gene ID data is supported.

Gene ID:


Gene Name: SEMA4F ssemaphorin 4F [ Homo sapiens (human) ]



GeneAtlas

Values are based on gene expression data taken from microarrays measuring whole-genome expression for a given tissue/cell type.

Probeset:

Probeset: 210124_x_at

SampleAvgMean
721_B_lymphoblasts4.754.11
Amygdala7.14.11
BDCA4+_DentriticCells4.24.11
CD105+_Endothelial5.354.11
CD19+_BCells(neg._sel.)5.354.11
CD33+_Myeloid4.84.11
CD34+4.754.11
CD4+_Tcells5.254.11
CD56+_NKCells11.054.11
CD8+_Tcells10.554.11
CardiacMyocytes4.54.11
Fetalbrain7.254.11
Heart4.54.11
Hypothalamus5.654.11
Liver4.754.11
Lymphoma_burkitts(Daudi)4.654.11
Lymphoma_burkitts(Raji)54.11
MedullaOblongata4.154.11
Pituitary4.34.11
PrefrontalCortex5.654.11
Prostate4.354.11
SmoothMuscle4.24.11
Thyroid4.654.11
pineal_day6.664.11
pineal_night5.764.11
retina4.6754.11

NCI60

This data set displays a survey across a diverse set of tissue culture cell lines by microarray.

Probeset:

Probeset: 208124_s_at

SampleAvgMean
A36114.9247.84
HOP629.9887.84
LN1822.2757.84
SHSYSY-RA16.1377.84
SN12C20.2477.84
SNB1911.157.84
U1189.56357.84
U13822.90257.84

Probeset: 210124_x_at

SampleAvgMean
A172104.0661
A20485.35761
A36170.23161
HCT1573.17861
HEK29398.817561
HOP62141.95761
HOP9284.30361
IGROV175.0261
LN18153.168561
LOX IMVI87.38861
MDA MB43570.87361
OVCAR378.1761
PANC161.24761
SF29596.19361
SHSYSY+RA92.96461
SHSYSY-RA85.10561
SKMEL28159.16961
SKMEL591.40561
SN12C76.26561
SNB19126.8161
U118140.04261
U138283.071561
U8773.202561

UniGene EST

EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by sequence submitters).

Type:



Please go here to view list of all tissues and cell lines tested.

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Legend for all data units:

BioGPS (GeneAtlas and NCI60): Expression values relate to array fluorescence intensity for a given gene for a given probeset.
Avg: The average statistical value from two readings from the same probeset experiment.
Median: The median statistical value across all tissue/cell readings; and the threshold for positive expression determination.

NCBI UniGene EST: EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by NCBI sequence submitters).
Libraries known to be normalized, subtracted, or otherwise biased have been removed, but for a variety of reasons, EST counts may not be a true indication of gene activity.
TPM: Transcripts per million
Gene EST/Total EST: Raw number of specific gene EST’s detected in total EST’s from that tissue pool.