Aviva RNA Seq Tool

The gene expression profile information found on this page is intended to assist researchers in identifying tissues/cell samples that express a given gene. Gene expression profile information is taken from publicly available RNA-seq analysis and does not necessarily imply appreciable amounts at the protein level in the tissue/cell samples indicated.

Gene ID:

Gene Name: SMC5 structural maintenance of chromosomes 5 [ Homo sapiens (human) ]



Tissue

SampleValue (FPKM)Abundance
Adipose Tissue9.80Low
Adrenal Gland10.20Medium
Appendix22.20Medium
Bone Marrow16.30Medium
Cerebral Cortex6.80Low
Colon15.30Medium
Daudi30.20Medium
Duodenum16.10Medium
Esophagus13.50Medium
Gallbladder18.80Medium
Heart Muscle8.10Low
Kidney9.30Low
Liver9.80Low
Lung16.60Medium
Lymph Node23.80Medium
Ovary30.10Medium
Pancreas10.20Medium
Placenta15.30Medium
Prostate14.30Medium
Salivary Gland14.20Medium
Skin11.30Medium
Small Intestine17.10Medium
Spleen15.50Medium
Stomach18.00Medium
Testis16.70Medium
Thyroid Gland17.30Medium
Urinary Bladder16.50Medium
Uterus21.10Medium

Cell Line

SampleValue (FPKM)Abundance
A-43130.90Medium
A-5497.60Low
AN3-CA12.10Low
BEWO17.60Low
CACO-23.00Low
CAPAN-217.40Low
EFO-217.90Low
HaCaT28.40Medium
HDLM-214.80Low
HEK 2939.30Low
HEL20.50Medium
HeLa16.70Low
Hep-G29.70Low
HL-6030.90Medium
HMC-119.40Low
K-56214.70Low
Karpas-70711.40Low
MCF-75.20Low
MOLT-438.60Medium
NB-411.00Low
NTERA-216.60Low
PC-313.40Low
REH25.00Medium
RH-3033.00Medium
RPMI-82269.70Low
RT-417.50Low
SCLC-21H16.60Low
SH-SY5Y12.10Low
SiHa22.20Medium
SK-BR-312.40Low
SK-MEL-306.20Low
THP-113.30Low
TIME13.30Low
U-138 MG16.50Low
U-2 OS18.30Low
U-219720.00Medium
U-251 MG29.60Medium
U-266/7015.50Low
U-266/8421.50Medium
U-69818.50Low
U-87 MG14.50Low
U-93717.10Low
WM-11518.50Low


Please go here to view list of all tissues and cell lines tested.

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Legend for all data units:

FPKM: Fragments Per Kilobase Of Exon Per Million Fragments Mapped

RNA-SEQ data for Tissues: European Molecular Biology Laboratory-The European Bioinformatics Institute (EMBL-EBI) ArrayExpress E-MTAB-1733

RNA-SEQ data for Cell Lines: NCBI BioProject