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Aviva Tissue Tool

The gene expression profile information found on this page is intended to assist researchers in identifying tissues/cell samples that express a given gene. Only data supported, expression-positive tissues/cell samples (i.e., AVG > MEAN) are displayed for each dataset. Gene expression profile information is taken from nucleic acid-based microarray analysis and does not necessarily imply appreciable amounts at the protein level in the tissue/cell samples indicated. Select expression data from multiple probesets (i.e., individual microarray experiments) using the drop down menu, where applicable. Microarray data is best suited for comparing multiple samples across a single probeset. Comparing expression values across different probesets is not recommended. Only human and mouse gene ID data is supported.

Gene ID:

Gene Name: ZKSCAN5 zinc finger with KRAB and SCAN domains 5 [ Homo sapiens (human) ]

GeneAtlas

Values are based on gene expression data taken from microarrays measuring whole-genome expression for a given tissue/cell type.

Probeset:

NCI60

This data set displays a survey across a diverse set of tissue culture cell lines by microarray.

Probeset:

Probeset: 203730_s_at

SampleAvgMean
A172106.14549.81
A36152.77849.81
A49863.18849.81
ACHN96.88149.81
DU14551.73349.81
EKVX51.26749.81
GM1600268.99749.81
GM231382.42649.81
GM234573.92949.81
HCT1566.52149.81
HT108090.58249.81
LN18146.09749.81
M1486.28649.81
MALME 3M82.90149.81
NCI H2354.66849.81
NCI H322M62.50949.81
OVCAR497.77349.81
PANC168.81449.81
SAOS254.11649.81
SHSYSY+RA86.20849.81
SHSYSY-RA96.16249.81
U138115.530549.81
U8765.644549.81
UACC6253.05849.81
UO3150.32349.81

Probeset: 203731_s_at

SampleAvgMean
ALVA317.0786.62
CAKI16.9686.62
GM976.76.62
HCT156.8656.62
HEK 293 T-rex9.19156.62
HEK2938.4116.62
KM126.7646.62
LN186.71956.62
MOLT46.7346.62
OVCAR36.8166.62
OVCAR46.8636.62
U13812.1776.62
U20S10.2696.62
U2517.4826.62
U877.94756.62
huh-77.34856.62

UniGene EST

EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by sequence submitters).

Type:

Breakdown by Body Sites

Pool NameTPMGene EST/Total EST in pool
Bladder331/29860
Blood162/122252
Bone272/71618
Brain1921/1092688
Cervix201/48486
Connective Tissue203/149072
Embryonic Tissue235/212896
Eye235/208840
Heart111/89524
Intestine307/231981
Kidney378/210778
Liver245/205291
Lung3813/334815
Lymph Node222/89748
Mammary Gland335/151230
Mouth453/66150
Muscle9410/106371
Ovary192/101488
Pancreas92/213440
Parathyroid481/20594
Pharynx241/40725
Pituitary Gland601/16526
Placenta103/283019
Prostate265/189536
Skin286/210759
Spleen181/53397
Stomach202/95679
Testis3917/435204
Thymus121/79697
Thyroid211/46583
Trachea191/51780
Umbilical Cord1452/13764
Uterus4310/232093
Vascular191/51649

Breakdown by Health State

Pool NameTPMGene EST/Total EST in pool
Breast (mammary Gland) Tumor323/93090
Cervical Tumor281/34484
Chondrosarcoma484/82838
Colorectal Tumor354/112517
Gastrointestinal Tumor253/118498
Germ Cell Tumor4512/263230
Glioma91/107194
Head And Neck Tumor294/133826
Kidney Tumor433/68872
Leukemia101/94479
Liver Tumor525/96023
Lung Tumor293/102765
Non-neoplasia101/96623
Normal2481/3328811
Pancreatic Tumor192/105004
Primitive Neuroectodermal Tumor...233/127001
Prostate Cancer91/103844
Retinoblastoma211/46439
Skin Tumor233/125373
Soft Tissue/muscle Tissue Tumor314/125265
Uterine Tumor111/90107

Breakdown by Developmental Stage

Pool NameTPMGene EST/Total EST in pool
Embryoid Body141/69969
Blastocyst654/61448
Fetus3419/556978
Neonate642/31070
Juvenile171/55574
Adult3364/1921829

Please go here to view list of all tissues and cell lines tested.

Would you like to participate in a quick survey?

Legend for all data units:

BioGPS (GeneAtlas and NCI60): Expression values relate to array fluorescence intensity for a given gene for a given probeset.
Avg: The average statistical value from two readings from the same probeset experiment.
Median: The median statistical value across all tissue/cell readings; and the threshold for positive expression determination.

NCBI UniGene EST: EST profiles show approximate gene expression patterns as inferred from EST counts and the cDNA library sources (as reported by NCBI sequence submitters).
Libraries known to be normalized, subtracted, or otherwise biased have been removed, but for a variety of reasons, EST counts may not be a true indication of gene activity.
TPM: Transcripts per million
Gene EST/Total EST: Raw number of specific gene EST’s detected in total EST’s from that tissue pool.

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